Module pdb

Package de.grogra.ext.pdb.model

Interface IProtein

All Known Implementing Classes:

Protein

public interface IProtein

Author:

fdill This is the interface for the data model. Implementing these methods should enable every data model to be visualized, because the visualizers work on this interface.

Method Summary

Modifier and Type	Method	Description
String	getAcidName(int sequence, int acid)
String	getAtomName(int sequence, int acid, int atom)
String	getElement(int sequence, int acid, int atom)
int	getNumberOfAcids(int sequence)
int	getNumberOfAtoms(int sequence, int acid)
int	getNumberOfSequences()
int	getResSeqNr(int sequence, int acid)
float	getXCoord(int sequence, int acid, int atom)
float	getYCoord(int sequence, int acid, int atom)
float	getZCoord(int sequence, int acid, int atom)

Method Details

getAcidName

String getAcidName(int sequence,
 int acid)

getResSeqNr

int getResSeqNr(int sequence,
 int acid)

getXCoord

float getXCoord(int sequence,
 int acid,
 int atom)

getYCoord

float getYCoord(int sequence,
 int acid,
 int atom)

getZCoord

float getZCoord(int sequence,
 int acid,
 int atom)

getElement

String getElement(int sequence,
 int acid,
 int atom)

getAtomName

String getAtomName(int sequence,
 int acid,
 int atom)

getNumberOfSequences

int getNumberOfSequences()

getNumberOfAcids

int getNumberOfAcids(int sequence)

getNumberOfAtoms

int getNumberOfAtoms(int sequence,
 int acid)